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Gene ID | Species | Mobile RNA |
TLS | m5C | m6A | Adult plant |
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Gene ID | Species | Mobile RNA |
TLS | m5C | m6A | Adult plant |
Vasculature

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Pumpkin | Cucumber

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QTL
QTL ID | Trait | Chr | Start Position |
End Position | Length

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Distribution | Enrichment in QTL |
Ratio of Mobile RNA

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CmGm5C | CmGm6A | CmVm5C |
CmVm6A | CsGm5C | CsGm6A |
CsVm5C | CsVm6A

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Methylation | Mobile | SNP | QTL

News

CUCUME：The Cucurbit RNA methylation Database

The Database is dedicated to the collection and standardization of data on Cucurbitaceae RNA methylation sites, including m5C and m6A.

MeRIP-seq

Methylation sites of total RNA were analyzed and combined in both adult plants of cucumber (Cucumis sativus L. vs.‘Xintai Mici’) and pumpkin (Cucurbita moschata vs. ‘Qianglishi’ )respectively and vasculature exudation of them by using Methylated RNA Immunoprecipitation sequencing (MeRIP-seq).

Long-distance mobile mRNAs with methylation sites

The datasets of mobile mRNAs in cucumber and pumpkin were obtained from publication by using grafting with RNA-sequencing strategy.Learn more

Methylated mRNAs in each cucumber Quantitative trait locus (QTL)

QTL were obtained from publicated literature, which contains 287 cucumber QTL of 31 quantitative traits. For possible connections, the methylated mRNAs and their methylation sites can be queried separately in each QTL. Learn more

Methylated mRNAs - Single Nucleotide Polymophism (SNP)

SNP associated with certain agronomical traits were obtained from published references. For possible connections, the SNP locates in methylated mRNAs can be queried. Learn more